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  • System Status

About

  • About Dockstore
  • Dockstore Blog
  • Changelog
  • FAQ
  • News and Events (Archived)
  • Roadmap
  • Dockstore Dictionary
  • Templates

Getting Started (Tutorial)

  • Introduction
  • Introduction to Workflows and Tools
  • Getting Started with Docker
  • Getting Started with CWL
  • Getting Started with WDL
  • Getting Started with Nextflow
  • Getting Started with Galaxy
  • Creating a Dockstore Account
  • Register a Tool on Dockstore
  • Register a Workflow on Dockstore
  • Hosted Tools and Workflows
  • Services
  • Dockstore GitHub App

Launch Tools and Workflows

  • Dockstore CLI
  • AnVIL
  • BioData Catalyst
  • Cavatica
  • Cancer Genomics Cloud
  • DNAnexus
  • Galaxy
  • Nextflow Tower
  • Terra

End user topics

  • Introduction
  • Faceted Search
  • Starring Tools and Workflows
  • Language Support
  • ORCIDs in Dockstore

Videos (tutorials & presentations)

  • Videos

Best Practices

  • CWL Best Practices
  • WDL Best Practices
  • Nextflow Best Practices
  • Dockstore Best Practices
  • Best Practices for Secure and FAIR Workflows

Dockstore CLI

  • Installing the Dockstore CLI
  • Dockstore CLI FAQ
  • Using a Cromwell config with the Dockstore CLI
  • Set Up File Provisioning Plugins
  • Developing File Provisioning Plugins
  • Advanced CLI Features
  • Dockstore Yaml Command Line Validator Tool

Advanced Developer Topics

  • Overhauling Dockstore Tools
  • Detailed Comparison of Tools and Workflows
  • Legacy Features
    • Getting Started with CWL (Legacy)
    • Legacy Tool Registration Methods
    • Legacy Workflow Registration Methods
  • Docker Registries
  • Public and Private Dockstore Tools
  • Checker Workflows
  • TRS With Checker Workflows
  • Sharing Workflows
  • Aliases
  • Docker Alternatives
  • Creating Snapshots & Requesting DOIs
  • Checksums
  • Write-API Conversion Process
  • Batch Services
  • AWS Batch
  • Azure Batch
  • Posting Zip Files
  • Verification
  • Organizations and Collections
  • Launching workflows using WES and the Dockstore CLI

Extras

  • BCC 2020 Docker Training
  • BCC 2020 WDL Training
  • Posters and Talks
  • User Created
  • Dockstore Logo Usage Guidelines
Dockstore
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  • Legacy Features
  • Edit on GitHub

Legacy Features

  • Getting Started with CWL (Legacy)
  • Legacy Tool Registration Methods
  • Legacy Workflow Registration Methods
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